assessment of genetic diversity in different genotypes of brassica spp. using nbs-lrr markers

Authors

مهسا محمدجانی اسرمی

کارشناس ارشد، دانشگاه علوم کشاورزی و منابع طبیعی ساری حمید نجفی زرینی

استادیار، دانشگاه علوم کشاورزی و منابع طبیعی ساری سید حمیدرضا هاشمی

دانشجوی دکتری پژوهشکدۀ ژنتیک و زیست فناوری کشاورزی طبرستان، دانشگاه علوم کشاورزی و منابع طبیعی

abstract

breeding for resistance is one of the main approaches to control diseases. in this approach, there is a necessary for existence a sufficient genetic variability of resistance genes. accordingly, assessing the genetic variability in the available germplasm is needed to manage genetic resources. molecular markers are effective tools to investigate genetic diversity for resistance to pathogens. nbs-lrr (nucleotide-binding site- leucine rich repeat) marker can be used to study genetic variability. those markers specifically targets chromosome regions containing r-genes and r-gene analogues. in this study eight primer combinations of nbs markers were used to assess the genetic diversity among 46 accessions of brassica spp. as result, nbs markers amplified 790 dna bands that more than 89% bands were polymorphism. average pic (polymorphism information content) and average mi (marker index) were 0.29 and 26.36 respectively. cluster analysis based on simple match coefficient and upgma algorithm showed that there is wide variation in the evaluated samples. the average of similarity based onnbs markers was 0.66. these high levels of diversity of these amplified nbs markers indicate a high potential of these markers for discrimination the brassica genotypes.

Upgrade to premium to download articles

Sign up to access the full text

Already have an account?login

similar resources

Assessment of genetic diversity among sunflower genotypes using microsatellite markers

Genetic diversity estimation of plant materials is one of the important pre-breeding activities in breeding field crops. Twenty-one microsatellite markers used to assess genetic diversity and relationship of 68 sunflower genotypes (Helianthus annuus L.). All of 21 pairs of SSR (Simple Sequence Repeats) markers produced a total number of 49 polymorphic bands. DNA fragments ranged from 9...

full text

Genetic Diversity and Population Structure of Iranian tulips revealed by EST-SSR and NBS-LRR Markers

The genus Tulipa L. (Liliaceae) comprises about 100 species and Iran is considered as one of the main origins of tulips. In this research, genetic diversity and population structure of 27 wild populations of tulips collected from Iran were studied by 15 highly polymorphic and reproducible expressed sequenced tag-simple sequence repeat (EST-SSR) markers and 8 nucleotide binding site (NBS)-enzyme...

full text

Assessment of genetic diversity in quinoa (Chenopodium quinoa Willd.) genotypes using microsatellite markers

To evaluate the genetic diversity in quinoa genotypes for future studies, 60 imported quinoa genotypes were studied using microsatellite markers (SSR) at the faculty of agricultural sciences, University of Guilan, Rasht, Iran, in 2022. The results of the phenotypic evaluation of the quinoa genotypes showed that there was a relatively high diversity among them. Among the studied traits, seed yie...

full text

Assessment of genetic diversity in Brassica juncea (Brassicaceae) genotypes using phenotypic differences and SSR markers.

Brassica mustard species represent one of the most important oilseed crops in India, nevertheless, their genetic diversity is barely known. A better understanding on this topic is essential for the proper utilization of genotypes in breeding programmes. We evaluated the genetic diversity among 44 Indian mustard (Brassica juncea) genotypes including varieties/purelines from different agro-climat...

full text

Investigation of Genetic Diversity and Structure Analysis of Different Citrus Genotypes Using ISSR Markers

In breeding programs, it is necessary having knowledge of the relatedness and genetic diversity in germplasm pools. The spread of cultivated regions and the high levels of production indicates citrus importance in the global economy. Therefore, 110 citrus genotypes were evaluated using 12 ISSR markers. Overall, 154 polymorphic bands were scored with an average of 12.8 alleles per primer. The po...

full text

Efficiency of RAPD and ISSR markers in assessment of genetic diversity in Brassica napus genotypes

Evaluation of relationships is of prime importance in any breeding studies. In current research, genetic diversity among different rapeseed genotypes from several geographical origins including Canada, Australia, Germany, France, Denmark, Netherlands, Sweden, Iran, and Somegenotypesof unknown origin, were evaluated by RAPD and ISSR markers. All of the generated bands using 12 RAPDs and 15 ISSRs...

full text

Hosted on Doprax cloud platform doprax.com

copyright © 2015-2023